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RE: Jitter analysis

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Dan Fu, modified 3 Years ago.

Jitter analysis

Youngling Posts: 46 Join Date: 12/14/16 Recent Posts

Dear ss3 team,

 

I am trying to run a jittering analysis under V3.30.15.07-safe usng r4ss (Github developement version).

But I get the following error message:

 

jit.likes <- SS_RunJitter(mydir=mydir,model = 'ss.exe',Njitter=2)
Error trying to open data input file C:\Projects\2020\2020SW~1\Working\SS3\2020\basic\Jitter\ss.dat
 reading from STARTER.SS
 reading from data file
Data read sucessful 999

 reading forecast file 
 reading from control file
If you see 999, we got to the end of the control file successfully! 999
 read parm file
Error trying to open parameter input file ss.par
Table of likelihood values:
< table of extent 0 >
Warning message:
In SS_RunJitter(mydir = mydir, model = "ss.exe", Njitter = Njitter,  :
  No Report.sso file found from run 1
 

 

It seems to complain about the ss.par  file but I had ensured that the ss.par under the directory is correct (i.e. I have to problem running  under the command line)

I have attached all input files.  Could you please have a look at this issue?

 

Thanks

Dan

 

 

Attachments:

KJ
Kelli Faye Johnson, modified 3 Years ago.

RE: Jitter analysis

Youngling Posts: 28 Join Date: 6/13/17 Recent Posts

Dan,

I am sorry you are having problems. I was the last one to edit SS_RunJitter() so I am guessing I did something wrong. What operating system  are you running on? Also, have you tried running the command with model="ss" rather than model="ss.exe" ... I think that is where the bug is because it is renaming the par file with the model name and I did not account for the fact that it could have the extension on it. Please let me know if changing the input argument for model works for you.

Best,

Kelli

DF
Dan Fu, modified 3 Years ago.

RE: Jitter analysis

Youngling Posts: 46 Join Date: 12/14/16 Recent Posts

Hi Kelli,

You are quite right and the function seems to be working once changed to 'ss' !   The help file indeed mentioned something about using 'ss' rather than 'ss.exe'.  My neglect.  Thanks for your timely response. Much appreciated.

Cheers,

Dan

 

 

 

KJ
Kelli Faye Johnson, modified 3 Years ago.

RE: Jitter analysis

Youngling Posts: 28 Join Date: 6/13/17 Recent Posts

I recently pushed a change to r4ss that will allow for users to specify ss or ss.exe as well as a few other minor changes to make things more robust. Hopefully the new functionality will serve you well and be faster than the previous version of SS_RunJitter(). Thanks for your help on this!

Best,

Kelli