SS 3.30.13_beta mini-release

Forums

RSS (Opens New Window)

Richard Methot, modified 4 Years ago.

SS 3.30.13_beta mini-release

Youngling Posts: 219 Join Date: 11/24/14 Recent Posts

In response to a couple of user requests, here is a mini-release of 3.30.13_beta. For now it is only available in the windows version, but let us know if you need a different compilation. Find it in the folder 3.30.13_beta in the windows folder of the latest releases folder. We will add more features and get everything documented before doing a full release of 3.30.13.

The features in this release are:

allow gender=-1 to invoke Female SSB = SSB*fracfem
Where gender=1 ignores the fracfemale parameter and creates a total, asexual population; gender=2 uses fracfemale to split into 2 sexes at time of recruitment; gender=-1 creates an asexual population then multiplies by fracfemale at the time of reporting spawning biomass.
fix formatting problem for tags output in compreport.sso
create new Q option so that mirror Q uses an offset to ln(Q)
This is created for multi-area models where the user wants fleets to mirror Q and take the relative size of the areas into account.
ln_Q2 = ln_Q1 + ln(area1/area2).
so takes an extra parameter the value of which should be ln(area1/area2), if I have my signs correct.
revise warning for recrdist options

Rick

Michael Schirripa, modified 5 Years ago.

RE: SS 3.30.13_beta mini-release

Youngling Posts: 2 Join Date: 6/12/17 Recent Posts

Rick; I mentioned when you were down here about creating an output for year specific MSY (rather than running the model one year at a time). Do you think you and others might find that useful? Useful for when we have shifting selectivity/gear contributions to the catch. Thanks.

On Mon, Oct 15, 2018 at 2:30 PM Richard Methot <VLab.Notifications@noaa.gov> wrote:

In response to a couple of user requests, here is a mini-release of 3.30.13_beta. For now it is only available in the windows version, but let us know if you need a different compilation. Find it in the folder 3.30.13_beta in the windows folder of the latest releases folder. We will add more features and get everything documented before doing a full release of 3.30.13.

The features in this release are:

allow gender=-1 to invoke Female SSB = SSB*fracfem

Where gender=1 ignores the fracfemale parameter and creates a total, asexual population; gender=2 uses fracfemale to split into 2 sexes at time of recruitment; gender=-1 creates an asexual population then multiplies by fracfemale at the time of reporting spawning biomass.

fix formatting problem for tags output in compreport.sso

create new Q option so that mirror Q uses an offset to ln(Q)

This is created for multi-area models where the user wants fleets to mirror Q and take the relative size of the areas into account.

ln_Q2 = ln_Q1 + ln(area1/area2).

so takes an extra parameter the value of which should be ln(area1/area2), if I have my signs correct.

revise warning for recrdist options

Rick

--
Richard Methot Stock Synthesis Virtual Lab Forum https://vlab.noaa.gov/group/stock-synthesis/discussions-forums-/-/message_boards/view_message/5124578 VLab.Notifications@noaa.gov

The above e-mail represent my own claims and not those of NOAA or the Federal government

Michael J. Schirripa, Ph.D.
Research Fishery Biologist
NOAA Fisheries
Southeast Fisheries Science Center
Miami, FL 33149

Iago Mosqueira, modified 5 Years ago.

RE: SS 3.30.13_beta mini-release

Youngling Posts: 24 Join Date: 8/12/16 Recent Posts

I am having to review some SS3 runs carried out with this version, so it would be very useful having a Linux executable available. Is this difficult?

Thanks,

Iago

Iago Mosqueira, modified 5 Years ago.

RE: SS 3.30.13_beta mini-release

Youngling Posts: 24 Join Date: 8/12/16 Recent Posts

I have one model working with SS_3.3.30beta in windows that does not run in the executable for Linux of the same version. warning.sso says

illegal parmdevtype for parm 95

Iago

Ian Taylor, modified 5 Years ago.

RE: SS 3.30.13_beta mini-release

Youngling Posts: 117 Join Date: 12/8/14 Recent Posts

Hi Iago,

Thanks for reporting this. Could you email me your model files to debug--I think that would be more efficient than trying to replicate this independently.

-Ian

Ian Taylor, modified 5 Years ago.

RE: SS 3.30.13_beta mini-release

Youngling Posts: 117 Join Date: 12/8/14 Recent Posts

Hi Iago,

It looks like the issue is related to changes between ADMB 11.6 (which the Linux executable was compiled with) and ADMB 12.0 (which the Windows version used). At this point ADMB 12.0 seems thoroughly tested so I think there's no reason not to move to that version for all releases going forward.

-Ian