#V3.30.15.00-trans;_2020_03_26;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_12.0 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States. #Foreign copyrights may apply. See copyright.txt for more information. #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov #_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis #_data_and_control_files: data.ss // control.ss 0 # 0 means do not read wtatage.ss; 1 means read and use wtatage.ss and also read and use growth parameters 1 #_N_Growth_Patterns (Growth Patterns, Morphs, Bio Patterns, GP are terms used interchangeably in SS) 1 #_N_platoons_Within_GrowthPattern #_Cond 1 #_Platoon_within/between_stdev_ratio (no read if N_platoons=1) #_Cond 1 #vector_platoon_dist_(-1_in_first_val_gives_normal_approx) # 2 # recr_dist_method for parameters: 2=main effects for GP, Settle timing, Area; 3=each Settle entity; 4=none, only when N_GP*Nsettle*pop==1 1 # not yet implemented; Future usage: Spawner-Recruitment: 1=global; 2=by area 4 # number of recruitment settlement assignments 0 # unused option #GPattern month area age (for each settlement assignment) 1 1 1 0 1 1 2 0 1 1 3 0 1 1 4 0 # 8 #_N_movement_definitions 0.6 # first age that moves (real age at begin of season, not integer) # seas,GP,source_area,dest_area,minage,maxage 1 1 1 2 9 30 1 1 1 3 9 30 1 1 2 1 9 30 1 1 2 4 9 30 1 1 3 1 9 30 1 1 3 4 9 30 1 1 4 2 9 30 1 1 4 3 9 30 # 1 #_Nblock_Patterns 1 #_blocks_per_pattern # begin and end years of blocks 1949 1949 # # controls for all timevary parameters 1 #_env/block/dev_adjust_method for all time-vary parms (1=warn relative to base parm bounds; 3=no bound check) # # AUTOGEN 1 1 1 1 1 # autogen: 1st element for biology, 2nd for SR, 3rd for Q, 4th reserved, 5th for selex # where: 0 = autogen time-varying parms of this category; 1 = read each time-varying parm line; 2 = read then autogen if parm min==-12345 # #_Available timevary codes #_Block types: 0: P_block=P_base*exp(TVP); 1: P_block=P_base+TVP; 2: P_block=TVP; 3: P_block=P_block(-1) + TVP #_Block_trends: -1: trend bounded by base parm min-max and parms in transformed units (beware); -2: endtrend and infl_year direct values; -3: end and infl as fraction of base range #_EnvLinks: 1: P(y)=P_base*exp(TVP*env(y)); 2: P(y)=P_base+TVP*env(y); 3: null; 4: P(y)=2.0/(1.0+exp(-TVP1*env(y) - TVP2)) #_DevLinks: 1: P(y)*=exp(dev(y)*dev_se; 2: P(y)+=dev(y)*dev_se; 3: random walk; 4: zero-reverting random walk with rho; 21-24 keep last dev for rest of years # #_Prior_codes: 0=none; 6=normal; 1=symmetric beta; 2=CASAL's beta; 3=lognormal; 4=lognormal with biascorr; 5=gamma # # setup for M, growth, maturity, fecundity, recruitment distibution, movement # 0 #_natM_type:_0=1Parm; 1=N_breakpoints;_2=Lorenzen;_3=agespecific;_4=agespec_withseasinterpolate #_no additional input for selected M option; read 1P per morph # 1 # GrowthModel: 1=vonBert with L1&L2; 2=Richards with L1&L2; 3=age_specific_K_incr; 4=age_specific_K_decr; 5=age_specific_K_each; 6=NA; 7=NA; 8=growth cessation 0.01 #_Age(post-settlement)_for_L1;linear growth below this 999 #_Growth_Age_for_L2 (999 to use as Linf) -999 #_exponential decay for growth above maxage (value should approx initial Z; -999 replicates 3.24; -998 to not allow growth above maxage) 0 #_placeholder for future growth feature # 0 #_SD_add_to_LAA (set to 0.1 for SS2 V1.x compatibility) 0 #_CV_Growth_Pattern: 0 CV=f(LAA); 1 CV=F(A); 2 SD=F(LAA); 3 SD=F(A); 4 logSD=F(A) # 3 #_maturity_option: 1=length logistic; 2=age logistic; 3=read age-maturity matrix by growth_pattern; 4=read age-fecundity; 5=disabled; 6=read length-maturity #_Age_Maturity by growth pattern 0.001 0.006 0.027 0.109 0.354 0.711 0.917 0.98 0.996 0.999 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 #_First_Mature_Age 1 #_fecundity option:(1)eggs=Wt*(a+b*Wt);(2)eggs=a*L^b;(3)eggs=a*Wt^b; (4)eggs=a+b*L; (5)eggs=a+b*W 0 #_hermaphroditism option: 0=none; 1=female-to-male age-specific fxn; -1=male-to-female age-specific fxn 1 #_parameter_offset_approach (1=none, 2= M, G, CV_G as offset from female-GP1, 3=like SS2 V1.x) # #_growth_parms #_ LO HI INIT PRIOR PR_SD PR_type PHASE env_var&link dev_link dev_minyr dev_maxyr dev_PH Block Block_Fxn # Sex: 1 BioPattern: 1 NatMort 0.1 0.6 0.25 0.25 1 6 -8 0 0 0 0 0.5 0 0 # NatM_p_1_Fem_GP_1 # Sex: 1 BioPattern: 1 Growth 70 90 78.7 78.7 0.1 6 -2 0 0 0 0 0 0 0 # L_at_Amin_Fem_GP_1 250 340 275.812 275.812 0.1 6 -2 0 0 0 0 0 0 0 # L_at_Amax_Fem_GP_1 0.05 0.2 0.157 0.157 0.1 6 -3 0 0 0 0 0 0 0 # VonBert_K_Fem_GP_1 0.05 0.25 0.15 0.15 0.15 6 -3 0 0 0 0 0.5 0 0 # CV_young_Fem_GP_1 0.05 0.25 0.1 0.15 0.15 6 -3 0 0 0 0 0.5 0 0 # CV_old_Fem_GP_1 # Sex: 1 BioPattern: 1 WtLen -3 3 3.815e-006 3.815e-006 99 0 -3 0 0 0 0 0.5 0 0 # Wtlen_1_Fem -3 4 3.188 3.188 99 0 -3 0 0 0 0 0.5 0 0 # Wtlen_2_Fem # Sex: 1 BioPattern: 1 Maturity&Fecundity 35 73 55 55 99 0 -3 0 0 0 0 0 0 0 # Mat50%_Fem -3 3 -0.25 -0.25 99 0 -3 0 0 0 0 0 0 0 # Mat_slope_Fem -3 3 1 1 99 0 -3 0 0 0 0 0 0 0 # Eggs/kg_inter_Fem -3 3 0 0 99 0 -3 0 0 0 0 0 0 0 # Eggs/kg_slope_wt_Fem # Sex: 2 BioPattern: 1 NatMort 0.1 0.6 0.25 0.25 1 6 -8 0 0 0 0 0.5 0 0 # NatM_p_1_Mal_GP_1 # Sex: 2 BioPattern: 1 Growth 70 90 83.57 83.57 0.1 6 -2 0 0 0 0 0 0 0 # L_at_Amin_Mal_GP_1 200 280 213.768 213.768 0.1 6 -2 0 0 0 0 0 0 0 # L_at_Amax_Mal_GP_1 0.07 0.3 0.235 0.235 0.1 6 -3 0 0 0 0 0 0 0 # VonBert_K_Mal_GP_1 0.05 0.25 0.15 0.15 0.15 6 -3 0 0 0 0 0.5 0 0 # CV_young_Mal_GP_1 0.05 0.25 0.1 0.15 0.15 6 -3 0 0 0 0 0.5 0 0 # CV_old_Mal_GP_1 # Sex: 2 BioPattern: 1 WtLen -3 3 3.815e-006 3.815e-006 99 0 -3 0 0 0 0 0.5 0 0 # Wtlen_1_Mal -3 4 3.188 3.188 99 0 -3 0 0 0 0 0.5 0 0 # Wtlen_2_Mal # Hermaphroditism # Recruitment Distribution -8 8 0 1 99 0 -3 0 0 0 0 0.5 0 0 # RecrDist_GP_1 -8 8 0 1 99 0 -4 0 0 0 0 0.5 0 0 # RecrDist_Area_1 -8 8 -0.509876 1 99 0 4 0 1 1965 2014 4 0 0 # RecrDist_Area_2 -8 8 -0.295335 1 99 0 4 0 1 1965 2014 4 0 0 # RecrDist_Area_3 -8 8 -0.187103 1 99 0 4 0 1 1965 2014 4 0 0 # RecrDist_Area_4 -8 8 0 1 99 0 -7 0 0 0 0 0.5 0 0 # RecrDist_timing_1 # Cohort growth dev base 0.1 10 1 1 1 6 -1 0 0 0 0 0 0 0 # CohortGrowDev # Movement -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_A_seas_1_GP_1from_1to_2 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_B_seas_1_GP_1from_1to_2 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_A_seas_1_GP_1from_1to_3 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_B_seas_1_GP_1from_1to_3 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_A_seas_1_GP_1from_2to_1 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_B_seas_1_GP_1from_2to_1 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_A_seas_1_GP_1from_2to_4 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_B_seas_1_GP_1from_2to_4 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_A_seas_1_GP_1from_3to_1 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_B_seas_1_GP_1from_3to_1 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_A_seas_1_GP_1from_3to_4 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_B_seas_1_GP_1from_3to_4 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_A_seas_1_GP_1from_4to_2 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_B_seas_1_GP_1from_4to_2 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_A_seas_1_GP_1from_4to_3 -8 9 -7 -5 5 6 -9 0 0 0 0 0 0 0 # MoveParm_B_seas_1_GP_1from_4to_3 # Age Error from parameters # catch multiplier # fraction female, by GP 0.000001 0.999999 0.5 0.5 0.5 0 -99 0 0 0 0 0 0 0 # FracFemale_GP_1 # # timevary MG parameters #_ LO HI INIT PRIOR PR_SD PR_type PHASE 0.0001 2 0.9 0.9 0.5 6 -5 # RecrDist_Area_2_dev_se -0.99 0.99 0 0 0.5 6 -6 # RecrDist_Area_2_dev_autocorr 0.0001 2 0.9 0.9 0.5 6 -5 # RecrDist_Area_3_dev_se -0.99 0.99 0 0 0.5 6 -6 # RecrDist_Area_3_dev_autocorr 0.0001 2 0.9 0.9 0.5 6 -5 # RecrDist_Area_4_dev_se -0.99 0.99 0 0 0.5 6 -6 # RecrDist_Area_4_dev_autocorr # info on dev vectors created for MGparms are reported with other devs after tag parameter section # #_seasonal_effects_on_biology_parms 0 0 0 0 0 0 0 0 0 0 #_femwtlen1,femwtlen2,mat1,mat2,fec1,fec2,Malewtlen1,malewtlen2,L1,K #_ LO HI INIT PRIOR PR_SD PR_type PHASE #_Cond -2 2 0 0 -1 99 -2 #_placeholder when no seasonal MG parameters # 3 #_Spawner-Recruitment; Options: 1=NA; 2=Ricker; 3=std_B-H; 4=SCAA; 5=Hockey; 6=B-H_flattop; 7=survival_3Parm; 8=Shepherd_3Parm; 9=RickerPower_3parm 0 # 0/1 to use steepness in initial equ recruitment calculation 0 # future feature: 0/1 to make realized sigmaR a function of SR curvature #_ LO HI INIT PRIOR PR_SD PR_type PHASE env-var use_dev dev_mnyr dev_mxyr dev_PH Block Blk_Fxn # parm_name 7 18 8.42702 11 100 0 3 0 0 0 0 0 0 0 # SR_LN(R0) 0.2 1 0.8 0.8 0.1 1 -10 0 0 0 0 0 0 0 # SR_BH_steep 0 2 0.2 0.2 0.8 0 -3 0 0 0 0 0 0 0 # SR_sigmaR -5 5 0 0 1 6 -4 0 0 0 0 0 0 0 # SR_regime 0 0 0 0 0 0 -99 0 0 0 0 0 0 0 # SR_autocorr #_no timevary SR parameters 1 #do_recdev: 0=none; 1=devvector (R=F(SSB)+dev); 2=deviations (R=F(SSB)+dev); 3=deviations (R=R0*dev; dev2=R-f(SSB)); 4=like 3 with sum(dev2) adding penalty 1950 # first year of main recr_devs; early devs can preceed this era 2014 # last year of main recr_devs; forecast devs start in following year 6 #_recdev phase 1 # (0/1) to read 13 advanced options 0 #_recdev_early_start (0=none; neg value makes relative to recdev_start) -5 #_recdev_early_phase 5 #_forecast_recruitment phase (incl. late recr) (0 value resets to maxphase+1) 1 #_lambda for Fcast_recr_like occurring before endyr+1 1970 #_last_yr_nobias_adj_in_MPD; begin of ramp 1970 #_first_yr_fullbias_adj_in_MPD; begin of plateau 2014 #_last_yr_fullbias_adj_in_MPD 2014 #_end_yr_for_ramp_in_MPD (can be in forecast to shape ramp, but SS sets bias_adj to 0.0 for fcast yrs) 1 #_max_bias_adj_in_MPD (typical ~0.8; -3 sets all years to 0.0; -2 sets all non-forecast yrs w/ estimated recdevs to 1.0; -1 sets biasadj=1.0 for all yrs w/ recdevs) 0 #_period of cycles in recruitment (N parms read below) -6 #min rec_dev 6 #max rec_dev 0 #_read_recdevs #_end of advanced SR options # #_placeholder for full parameter lines for recruitment cycles # read specified recr devs #_Yr Input_value # # all recruitment deviations # 1950R 1951R 1952R 1953R 1954R 1955R 1956R 1957R 1958R 1959R 1960R 1961R 1962R 1963R 1964R 1965R 1966R 1967R 1968R 1969R 1970R 1971R 1972R 1973R 1974R 1975R 1976R 1977R 1978R 1979R 1980R 1981R 1982R 1983R 1984R 1985R 1986R 1987R 1988R 1989R 1990R 1991R 1992R 1993R 1994R 1995R 1996R 1997R 1998R 1999R 2000R 2001R 2002R 2003R 2004R 2005R 2006R 2007R 2008R 2009R 2010R 2011R 2012R 2013R 2014R 2015F 2016F 2017F 2018F 2019F 2020F 2021F 2022F 2023F 2024F 2025F # 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # implementation error by year in forecast: 0 0 0 0 0 0 0 0 0 0 # #Fishing Mortality info 0.2 # F ballpark value in units of annual_F 2003 # F ballpark year (neg value to disable) 3 # F_Method: 1=Pope; 2=instan. F; 3=hybrid (hybrid is recommended) 4 # max F or harvest rate, depends on F_Method # no additional F input needed for Fmethod 1 # if Fmethod=2; read overall start F value; overall phase; N detailed inputs to read # if Fmethod=3; read N iterations for tuning for Fmethod 3 2 # N iterations for tuning F in hybrid method (recommend 3 to 7) # #_initial_F_parms; count = 0 #_ LO HI INIT PRIOR PR_SD PR_type PHASE #2025 2036 # F rates by fleet # Yr: 1950 1951 1952 1953 1954 1955 1956 1957 1958 1959 1960 1961 1962 1963 1964 1965 1966 1967 1968 1969 1970 1971 1972 1973 1974 1975 1976 1977 1978 1979 1980 1981 1982 1983 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025 # seas: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 # ALGI_NW 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4 4 4 4 4 4 4 4 4 # JPLL_NW 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # TWLL_NW 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # ALGI_NE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # JPLL_NE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # TWLL_NE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # TWFL_NE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # EUEL_SW 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # ISEL_SW 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # JPLL_SW 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # TWLL_SW 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # AUEL_SE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # EUEL_SE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # JPLL_SE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # TWLL_SE 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # #_Q_setup for fleets with cpue or survey data #_1: fleet number #_2: link type: (1=simple q, 1 parm; 2=mirror simple q, 1 mirrored parm; 3=q and power, 2 parm; 4=mirror with offset, 2 parm) #_3: extra input for link, i.e. mirror fleet# or dev index number #_4: 0/1 to select extra sd parameter #_5: 0/1 for biasadj or not #_6: 0/1 to float #_ fleet link link_info extra_se biasadj float # fleetname 16 1 0 0 0 0 # UJPLL_NW 17 2 16 0 1 0 # UJPLL_NE 18 2 16 0 1 0 # UJPLL_SW 19 2 16 0 1 0 # UJPLL_SE 20 1 0 0 0 1 # UTWLL_NW 21 1 0 0 0 1 # UTWLL_NE 22 1 0 0 0 1 # UTWLL_SW 23 1 0 0 0 1 # UTWLL_SE 24 1 0 0 0 1 # UPOR_SW 25 1 0 0 0 1 # UESP_SW 26 1 0 0 0 1 # UZAF_SW 27 1 0 0 0 1 # UIND_NE 28 1 0 0 0 1 # UJPLL_NW_pre 29 1 0 0 0 1 # UJPLL_NE_pre 30 1 0 0 0 1 # UJPLL_SW_pre 31 1 0 0 0 1 # UJPLL_SE_pre 32 1 0 0 0 1 # UTWLL_NW_pre 33 1 0 0 0 1 # UTWLL_NE_pre 34 1 0 0 0 1 # UTWLL_SW_pre 35 1 0 0 0 1 # UTWLL_SE_pre -9999 0 0 0 0 0 # #_Q_parms(if_any);Qunits_are_ln(q) #_ LO HI INIT PRIOR PR_SD PR_type PHASE env-var use_dev dev_mnyr dev_mxyr dev_PH Block Blk_Fxn # parm_name -25 25 -11.3081 0 1 0 1 0 0 0 0 0 0 0 # LnQ_base_UJPLL_NW(16) -25 25 0 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UJPLL_NE(17) -25 25 0 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UJPLL_SW(18) -25 25 0 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UJPLL_SE(19) -25 25 -11.3733 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UTWLL_NW(20) -25 25 -11.3086 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UTWLL_NE(21) -25 25 -12.5867 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UTWLL_SW(22) -25 25 -12.0548 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UTWLL_SE(23) -25 25 -14.6954 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UPOR_SW(24) -25 25 -12.9393 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UESP_SW(25) -25 25 -14.5541 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UZAF_SW(26) -25 25 -15.9842 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UIND_NE(27) -25 25 -11.9049 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UJPLL_NW_pre(28) -25 25 -11.9102 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UJPLL_NE_pre(29) -25 25 -12.0918 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UJPLL_SW_pre(30) -25 25 -12.7464 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UJPLL_SE_pre(31) -25 25 -10.9923 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UTWLL_NW_pre(32) -25 25 -10.3937 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UTWLL_NE_pre(33) -25 25 -10.3049 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UTWLL_SW_pre(34) -25 25 -10.7787 0 1 0 -1 0 0 0 0 0 0 0 # LnQ_base_UTWLL_SE_pre(35) #_no timevary Q parameters # #_size_selex_patterns #Pattern:_0; parm=0; selex=1.0 for all sizes #Pattern:_1; parm=2; logistic; with 95% width specification #Pattern:_5; parm=2; mirror another size selex; PARMS pick the min-max bin to mirror #Pattern:_15; parm=0; mirror another age or length selex #Pattern:_6; parm=2+special; non-parm len selex #Pattern:_43; parm=2+special+2; like 6, with 2 additional param for scaling (average over bin range) #Pattern:_8; parm=8; New doublelogistic with smooth transitions and constant above Linf option #Pattern:_9; parm=6; simple 4-parm double logistic with starting length; parm 5 is first length; parm 6=1 does desc as offset #Pattern:_21; parm=2+special; non-parm len selex, read as pairs of size, then selex #Pattern:_22; parm=4; double_normal as in CASAL #Pattern:_23; parm=6; double_normal where final value is directly equal to sp(6) so can be >1.0 #Pattern:_24; parm=6; double_normal with sel(minL) and sel(maxL), using joiners #Pattern:_25; parm=3; exponential-logistic in size #Pattern:_27; parm=3+special; cubic spline #Pattern:_42; parm=2+special+3; // like 27, with 2 additional param for scaling (average over bin range) #_discard_options:_0=none;_1=define_retention;_2=retention&mortality;_3=all_discarded_dead;_4=define_dome-shaped_retention #_Pattern Discard Male Special 24 0 0 0 # 1 ALGI_NW 1 0 0 0 # 2 JPLL_NW 24 0 0 0 # 3 TWLL_NW 5 0 0 1 # 4 ALGI_NE 1 0 0 0 # 5 JPLL_NE 24 0 0 0 # 6 TWLL_NE 24 0 0 0 # 7 TWFL_NE 24 0 0 0 # 8 EUEL_SW 24 0 0 0 # 9 ISEL_SW 1 0 0 0 # 10 JPLL_SW 24 0 0 0 # 11 TWLL_SW 24 0 0 0 # 12 AUEL_SE 24 0 0 0 # 13 EUEL_SE 1 0 0 0 # 14 JPLL_SE 24 0 0 0 # 15 TWLL_SE 5 0 0 2 # 16 UJPLL_NW 5 0 0 5 # 17 UJPLL_NE 5 0 0 10 # 18 UJPLL_SW 5 0 0 14 # 19 UJPLL_SE 5 0 0 3 # 20 UTWLL_NW 5 0 0 6 # 21 UTWLL_NE 5 0 0 11 # 22 UTWLL_SW 5 0 0 15 # 23 UTWLL_SE 5 0 0 8 # 24 UPOR_SW 5 0 0 8 # 25 UESP_SW 5 0 0 8 # 26 UZAF_SW 5 0 0 7 # 27 UIND_NE 5 0 0 2 # 28 UJPLL_NW_pre 5 0 0 5 # 29 UJPLL_NE_pre 5 0 0 10 # 30 UJPLL_SW_pre 5 0 0 14 # 31 UJPLL_SE_pre 5 0 0 3 # 32 UTWLL_NW_pre 5 0 0 6 # 33 UTWLL_NE_pre 5 0 0 11 # 34 UTWLL_SW_pre 5 0 0 15 # 35 UTWLL_SE_pre # #_age_selex_patterns #Pattern:_0; parm=0; selex=1.0 for ages 0 to maxage #Pattern:_10; parm=0; selex=1.0 for ages 1 to maxage #Pattern:_11; parm=2; selex=1.0 for specified min-max age #Pattern:_12; parm=2; age logistic #Pattern:_13; parm=8; age double logistic #Pattern:_14; parm=nages+1; age empirical #Pattern:_15; parm=0; mirror another age or length selex #Pattern:_16; parm=2; Coleraine - Gaussian #Pattern:_17; parm=nages+1; empirical as random walk N parameters to read can be overridden by setting special to non-zero #Pattern:_41; parm=2+nages+1; // like 17, with 2 additional param for scaling (average over bin range) #Pattern:_18; parm=8; double logistic - smooth transition #Pattern:_19; parm=6; simple 4-parm double logistic with starting age #Pattern:_20; parm=6; double_normal,using joiners #Pattern:_26; parm=3; exponential-logistic in age #Pattern:_27; parm=3+special; cubic spline in age #Pattern:_42; parm=2+special+3; // cubic spline; with 2 additional param for scaling (average over bin range) #Age patterns entered with value >100 create Min_selage from first digit and pattern from remainder #_Pattern Discard Male Special 10 0 0 0 # 1 ALGI_NW 10 0 0 0 # 2 JPLL_NW 10 0 0 0 # 3 TWLL_NW 10 0 0 0 # 4 ALGI_NE 10 0 0 0 # 5 JPLL_NE 10 0 0 0 # 6 TWLL_NE 10 0 0 0 # 7 TWFL_NE 10 0 0 0 # 8 EUEL_SW 10 0 0 0 # 9 ISEL_SW 10 0 0 0 # 10 JPLL_SW 10 0 0 0 # 11 TWLL_SW 10 0 0 0 # 12 AUEL_SE 10 0 0 0 # 13 EUEL_SE 10 0 0 0 # 14 JPLL_SE 10 0 0 0 # 15 TWLL_SE 10 0 0 0 # 16 UJPLL_NW 10 0 0 0 # 17 UJPLL_NE 10 0 0 0 # 18 UJPLL_SW 10 0 0 0 # 19 UJPLL_SE 10 0 0 0 # 20 UTWLL_NW 10 0 0 0 # 21 UTWLL_NE 10 0 0 0 # 22 UTWLL_SW 10 0 0 0 # 23 UTWLL_SE 10 0 0 2 # 24 UPOR_SW 10 0 0 2 # 25 UESP_SW 10 0 0 2 # 26 UZAF_SW 10 0 0 2 # 27 UIND_NE 10 0 0 2 # 28 UJPLL_NW_pre 10 0 0 2 # 29 UJPLL_NE_pre 10 0 0 2 # 30 UJPLL_SW_pre 10 0 0 2 # 31 UJPLL_SE_pre 10 0 0 2 # 32 UTWLL_NW_pre 10 0 0 2 # 33 UTWLL_NE_pre 10 0 0 2 # 34 UTWLL_SW_pre 10 0 0 2 # 35 UTWLL_SE_pre # #_ LO HI INIT PRIOR PR_SD PR_type PHASE env-var use_dev dev_mnyr dev_mxyr dev_PH Block Blk_Fxn # parm_name # 1 ALGI_NW LenSelex 50 200 91.86 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_ALGI_NW(1) -6 4 -1.061 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_ALGI_NW(1) -1 9 4.714 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_ALGI_NW(1) -1 9 4 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_ALGI_NW(1) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_ALGI_NW(1) -5 9 -0.730581 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_ALGI_NW(1) # 2 JPLL_NW LenSelex 50 200 150 150 20 1 1 0 0 0 0 0 0 0 # SizeSel_P1_JPLL_NW(2) 10.01 100 20 20 20 1 3 0 0 0 0 0 0 0 # SizeSel_P2_JPLL_NW(2) # 3 TWLL_NW LenSelex 50 200 142.278 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_TWLL_NW(3) -6 4 -0.316252 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_TWLL_NW(3) -1 9 6.97936 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_TWLL_NW(3) -1 9 5.26149 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_TWLL_NW(3) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_TWLL_NW(3) -5 9 -1.57659 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_TWLL_NW(3) # 4 ALGI_NE LenSelex -1 200 -1 -1 0.01 1 -2 0 0 0 0 0 0 0 # SizeSel_P1_ALGI_NE(4) -1 200 -1 -1 0.01 1 -3 0 0 0 0 0 0 0 # SizeSel_P2_ALGI_NE(4) # 5 JPLL_NE LenSelex 50 200 150 150 20 1 2 0 0 0 0 0 0 0 # SizeSel_P1_JPLL_NE(5) 10.01 100 20 20 20 1 3 0 0 0 0 0 0 0 # SizeSel_P2_JPLL_NE(5) # 6 TWLL_NE LenSelex 50 200 142.278 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_TWLL_NE(6) -6 4 -0.316252 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_TWLL_NE(6) -1 9 6.97936 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_TWLL_NE(6) -1 9 5.26149 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_TWLL_NE(6) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_TWLL_NE(6) -5 9 -1.57659 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_TWLL_NE(6) # 7 TWFL_NE LenSelex 50 200 142.278 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_TWFL_NE(7) -6 4 -0.316252 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_TWFL_NE(7) -1 9 6.97936 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_TWFL_NE(7) -1 9 5.26149 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_TWFL_NE(7) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_TWFL_NE(7) -5 9 -1.57659 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_TWFL_NE(7) # 8 EUEL_SW LenSelex 50 200 142.278 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_EUEL_SW(8) -6 4 -0.316252 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_EUEL_SW(8) -1 9 6.97936 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_EUEL_SW(8) -1 9 5.26149 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_EUEL_SW(8) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_EUEL_SW(8) -5 9 -1.57659 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_EUEL_SW(8) # 9 ISEL_SW LenSelex 50 200 142.278 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_ISEL_SW(9) -6 4 -0.316252 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_ISEL_SW(9) -1 9 6.97936 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_ISEL_SW(9) -1 9 5.26149 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_ISEL_SW(9) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_ISEL_SW(9) -5 9 -1.57659 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_ISEL_SW(9) # 10 JPLL_SW LenSelex 50 200 150 150 20 1 2 0 0 0 0 0 0 0 # SizeSel_P1_JPLL_SW(10) 10.01 100 20 20 20 1 3 0 0 0 0 0 0 0 # SizeSel_P2_JPLL_SW(10) # 11 TWLL_SW LenSelex 50 200 142.278 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_TWLL_SW(11) -6 4 -0.316252 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_TWLL_SW(11) -1 9 6.97936 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_TWLL_SW(11) -1 9 5.26149 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_TWLL_SW(11) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_TWLL_SW(11) -5 9 -1.57659 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_TWLL_SW(11) # 12 AUEL_SE LenSelex 50 200 142.278 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_AUEL_SE(12) -6 4 -0.316252 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_AUEL_SE(12) -1 9 6.97936 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_AUEL_SE(12) -1 9 5.26149 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_AUEL_SE(12) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_AUEL_SE(12) -5 9 -1.57659 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_AUEL_SE(12) # 13 EUEL_SE LenSelex 50 200 142.278 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_EUEL_SE(13) -6 4 -0.316252 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_EUEL_SE(13) -1 9 6.97936 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_EUEL_SE(13) -1 9 5.26149 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_EUEL_SE(13) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_EUEL_SE(13) -5 9 -1.57659 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_EUEL_SE(13) # 14 JPLL_SE LenSelex 50 200 150 150 20 1 2 0 0 0 0 0 0 0 # SizeSel_P1_JPLL_SE(14) 10.01 100 20 20 20 1 3 0 0 0 0 0 0 0 # SizeSel_P2_JPLL_SE(14) # 15 TWLL_SE LenSelex 50 200 142.278 150 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P1_TWLL_SE(15) -6 4 -0.316252 -3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P2_TWLL_SE(15) -1 9 6.97936 8.3 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P3_TWLL_SE(15) -1 9 5.26149 4 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P4_TWLL_SE(15) -15 -5 -10 -1 99 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P5_TWLL_SE(15) -5 9 -1.57659 -1 99 1 3 0 0 0 0 0.5 0 0 # SizeSel_P6_TWLL_SE(15) # 16 UJPLL_NW LenSelex -1 200 -1 1 0.01 1 -2 0 0 0 0 0 0 0 # SizeSel_P1_UJPLL_NW(16) -1 200 -1 -1 0.01 1 -3 0 0 0 0 0 0 0 # SizeSel_P2_UJPLL_NW(16) # 17 UJPLL_NE LenSelex -1 200 -1 1 0.01 1 -2 0 0 0 0 0 0 0 # SizeSel_P1_UJPLL_NE(17) -1 200 -1 -1 0.01 1 -3 0 0 0 0 0 0 0 # SizeSel_P2_UJPLL_NE(17) # 18 UJPLL_SW LenSelex -1 200 -1 1 0.01 1 -2 0 0 0 0 0 0 0 # SizeSel_P1_UJPLL_SW(18) -1 200 -1 -1 0.01 1 -3 0 0 0 0 0 0 0 # SizeSel_P2_UJPLL_SW(18) # 19 UJPLL_SE LenSelex -1 200 -1 1 0.01 1 -2 0 0 0 0 0 0 0 # SizeSel_P1_UJPLL_SE(19) -1 200 -1 -1 0.01 1 -3 0 0 0 0 0 0 0 # SizeSel_P2_UJPLL_SE(19) # 20 UTWLL_NW LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UTWLL_NW(20) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UTWLL_NW(20) # 21 UTWLL_NE LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UTWLL_NE(21) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UTWLL_NE(21) # 22 UTWLL_SW LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UTWLL_SW(22) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UTWLL_SW(22) # 23 UTWLL_SE LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UTWLL_SE(23) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UTWLL_SE(23) # 24 UPOR_SW LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UPOR_SW(24) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UPOR_SW(24) # 25 UESP_SW LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UESP_SW(25) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UESP_SW(25) # 26 UZAF_SW LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UZAF_SW(26) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UZAF_SW(26) # 27 UIND_NE LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UIND_NE(27) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UIND_NE(27) # 28 UJPLL_NW_pre LenSelex -1 200 -1 1 0.01 1 -2 0 0 0 0 0 0 0 # SizeSel_P1_UJPLL_NW_pre(28) -1 200 -1 -1 0.01 1 -3 0 0 0 0 0 0 0 # SizeSel_P2_UJPLL_NW_pre(28) # 29 UJPLL_NE_pre LenSelex -1 200 -1 1 0.01 1 -2 0 0 0 0 0 0 0 # SizeSel_P1_UJPLL_NE_pre(29) -1 200 -1 -1 0.01 1 -3 0 0 0 0 0 0 0 # SizeSel_P2_UJPLL_NE_pre(29) # 30 UJPLL_SW_pre LenSelex -1 200 -1 1 0.01 1 -2 0 0 0 0 0 0 0 # SizeSel_P1_UJPLL_SW_pre(30) -1 200 -1 -1 0.01 1 -3 0 0 0 0 0 0 0 # SizeSel_P2_UJPLL_SW_pre(30) # 31 UJPLL_SE_pre LenSelex -1 200 -1 1 0.01 1 -2 0 0 0 0 0 0 0 # SizeSel_P1_UJPLL_SE_pre(31) -1 200 -1 -1 0.01 1 -3 0 0 0 0 0 0 0 # SizeSel_P2_UJPLL_SE_pre(31) # 32 UTWLL_NW_pre LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UTWLL_NW_pre(32) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UTWLL_NW_pre(32) # 33 UTWLL_NE_pre LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UTWLL_NE_pre(33) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UTWLL_NE_pre(33) # 34 UTWLL_SW_pre LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UTWLL_SW_pre(34) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UTWLL_SW_pre(34) # 35 UTWLL_SE_pre LenSelex -5 3 1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P1_UTWLL_SE_pre(35) -5 3 -1 -4 0.05 1 -3 0 0 0 0 0.5 0 0 # SizeSel_P2_UTWLL_SE_pre(35) # 1 ALGI_NW AgeSelex # 2 JPLL_NW AgeSelex # 3 TWLL_NW AgeSelex # 4 ALGI_NE AgeSelex # 5 JPLL_NE AgeSelex # 6 TWLL_NE AgeSelex # 7 TWFL_NE AgeSelex # 8 EUEL_SW AgeSelex # 9 ISEL_SW AgeSelex # 10 JPLL_SW AgeSelex # 11 TWLL_SW AgeSelex # 12 AUEL_SE AgeSelex # 13 EUEL_SE AgeSelex # 14 JPLL_SE AgeSelex # 15 TWLL_SE AgeSelex # 16 UJPLL_NW AgeSelex # 17 UJPLL_NE AgeSelex # 18 UJPLL_SW AgeSelex # 19 UJPLL_SE AgeSelex # 20 UTWLL_NW AgeSelex # 21 UTWLL_NE AgeSelex # 22 UTWLL_SW AgeSelex # 23 UTWLL_SE AgeSelex # 24 UPOR_SW AgeSelex # 25 UESP_SW AgeSelex # 26 UZAF_SW AgeSelex # 27 UIND_NE AgeSelex # 28 UJPLL_NW_pre AgeSelex # 29 UJPLL_NE_pre AgeSelex # 30 UJPLL_SW_pre AgeSelex # 31 UJPLL_SE_pre AgeSelex # 32 UTWLL_NW_pre AgeSelex # 33 UTWLL_NE_pre AgeSelex # 34 UTWLL_SW_pre AgeSelex # 35 UTWLL_SE_pre AgeSelex #_no timevary selex parameters # 0 # use 2D_AR1 selectivity(0/1) #_no 2D_AR1 selex offset used # # Tag loss and Tag reporting parameters go next 0 # TG_custom: 0=no read and autogen if tag data exist; 1=read #_Cond -6 6 1 1 2 0.01 -4 0 0 0 0 0 0 0 #_placeholder if no parameters # # deviation vectors for timevary parameters # base base first block block env env dev dev dev dev dev # type index parm trend pattern link var vectr link _mnyr mxyr phase dev_vector # 1 23 1 0 0 2 0 1 1 1965 2014 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # 1 24 3 0 0 2 0 2 1 1965 2014 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # 1 25 5 0 0 2 0 3 1 1965 2014 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # # Input variance adjustments factors: #_1=add_to_survey_CV #_2=add_to_discard_stddev #_3=add_to_bodywt_CV #_4=mult_by_lencomp_N #_5=mult_by_agecomp_N #_6=mult_by_size-at-age_N #_7=mult_by_generalized_sizecomp #_Factor Fleet Value 4 1 0.1 4 2 0.1 4 3 0.1 4 4 0.1 4 5 0.1 4 6 0.1 4 7 0.1 4 8 0.1 4 9 0.1 4 10 0.1 4 11 0.1 4 12 0.1 4 13 0.1 4 14 0.1 4 15 0.1 -9999 1 0 # terminator # 4 #_maxlambdaphase 1 #_sd_offset; must be 1 if any growthCV, sigmaR, or survey extraSD is an estimated parameter # read 35 changes to default Lambdas (default value is 1.0) # Like_comp codes: 1=surv; 2=disc; 3=mnwt; 4=length; 5=age; 6=SizeFreq; 7=sizeage; 8=catch; 9=init_equ_catch; # 10=recrdev; 11=parm_prior; 12=parm_dev; 13=CrashPen; 14=Morphcomp; 15=Tag-comp; 16=Tag-negbin; 17=F_ballpark; 18=initEQregime #like_comp fleet phase value sizefreq_method 1 16 1 1 1 1 17 1 1 1 1 18 1 1 1 1 19 1 1 1 1 20 1 0.001 1 1 21 1 0.001 1 1 22 1 0.001 1 1 23 1 0.001 1 1 24 1 1 1 1 25 1 0.001 1 1 26 1 0.001 1 1 27 1 0.001 1 1 28 1 0.001 1 1 29 1 0.001 1 1 30 1 0.001 1 1 31 1 0.001 1 1 32 1 0.001 1 1 33 1 0.001 1 1 34 1 0.001 1 1 35 1 0.001 1 4 1 1 1 1 4 2 1 1 1 4 3 1 1 1 4 4 1 1 1 4 5 1 1 1 4 6 1 1 1 4 7 1 1 1 4 8 1 1 1 4 9 1 1 1 4 10 1 1 1 4 11 1 1 1 4 12 1 1 1 4 13 1 1 1 4 14 1 1 1 4 15 1 1 1 -9999 1 1 1 1 # terminator # # lambdas (for info only; columns are phases) # 0 0 0 0 #_CPUE/survey:_1 # 0 0 0 0 #_CPUE/survey:_2 # 0 0 0 0 #_CPUE/survey:_3 # 0 0 0 0 #_CPUE/survey:_4 # 0 0 0 0 #_CPUE/survey:_5 # 0 0 0 0 #_CPUE/survey:_6 # 0 0 0 0 #_CPUE/survey:_7 # 0 0 0 0 #_CPUE/survey:_8 # 0 0 0 0 #_CPUE/survey:_9 # 0 0 0 0 #_CPUE/survey:_10 # 0 0 0 0 #_CPUE/survey:_11 # 0 0 0 0 #_CPUE/survey:_12 # 0 0 0 0 #_CPUE/survey:_13 # 0 0 0 0 #_CPUE/survey:_14 # 0 0 0 0 #_CPUE/survey:_15 # 1 1 1 1 #_CPUE/survey:_16 # 1 1 1 1 #_CPUE/survey:_17 # 1 1 1 1 #_CPUE/survey:_18 # 1 1 1 1 #_CPUE/survey:_19 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_20 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_21 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_22 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_23 # 1 1 1 1 #_CPUE/survey:_24 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_25 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_26 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_27 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_28 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_29 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_30 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_31 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_32 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_33 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_34 # 0.001 0.001 0.001 0.001 #_CPUE/survey:_35 # 0 0 0 0 #_lencomp:_1 # 1 1 1 1 #_lencomp:_2 # 1 1 1 1 #_lencomp:_3 # 1 1 1 1 #_lencomp:_4 # 1 1 1 1 #_lencomp:_5 # 1 1 1 1 #_lencomp:_6 # 1 1 1 1 #_lencomp:_7 # 1 1 1 1 #_lencomp:_8 # 1 1 1 1 #_lencomp:_9 # 1 1 1 1 #_lencomp:_10 # 1 1 1 1 #_lencomp:_11 # 1 1 1 1 #_lencomp:_12 # 1 1 1 1 #_lencomp:_13 # 1 1 1 1 #_lencomp:_14 # 1 1 1 1 #_lencomp:_15 # 0 0 0 0 #_lencomp:_16 # 0 0 0 0 #_lencomp:_17 # 0 0 0 0 #_lencomp:_18 # 0 0 0 0 #_lencomp:_19 # 0 0 0 0 #_lencomp:_20 # 0 0 0 0 #_lencomp:_21 # 0 0 0 0 #_lencomp:_22 # 0 0 0 0 #_lencomp:_23 # 0 0 0 0 #_lencomp:_24 # 0 0 0 0 #_lencomp:_25 # 0 0 0 0 #_lencomp:_26 # 0 0 0 0 #_lencomp:_27 # 0 0 0 0 #_lencomp:_28 # 0 0 0 0 #_lencomp:_29 # 0 0 0 0 #_lencomp:_30 # 0 0 0 0 #_lencomp:_31 # 0 0 0 0 #_lencomp:_32 # 0 0 0 0 #_lencomp:_33 # 0 0 0 0 #_lencomp:_34 # 0 0 0 0 #_lencomp:_35 # 1 1 1 1 #_init_equ_catch # 1 1 1 1 #_recruitments # 1 1 1 1 #_parameter-priors # 1 1 1 1 #_parameter-dev-vectors # 1 1 1 1 #_crashPenLambda # 1 1 1 1 # F_ballpark_lambda 0 # (0/1/2) read specs for more stddev reporting: 0 = skip, 1 = read specs for reporting stdev for selectivity, size, and numbers, 2 = mortality in addition to values in option 1 # 0 2 0 0 # Selectivity: (1) fleet, (2) 1=len/2=age/3=both, (3) year, (4) N selex bins # 0 0 # Growth: (1) growth pattern, (2) growth ages # 0 0 0 # Numbers-at-age: (1) area(-1 for all), (2) year, (3) N ages # -1 # list of bin #'s for selex std (-1 in first bin to self-generate) # -1 # list of ages for growth std (-1 in first bin to self-generate) # -1 # list of ages for NatAge std (-1 in first bin to self-generate) 999