#C fishing mortality uses the hybrid method #_data_and_control_files: simple.dat // simple.ctl #_SS-V3.01-g-opt;_09/01/08;_Stock_Synthesis_by_Richard_Methot_(NOAA);_using_Otter_Research_ADMB_7.0.1 1 #_N_Growth_Patterns 1 #_N_Morphs_Within_GrowthPattern #Cond 1 #_Morph_between/within_stdev_ratio (no read if N_morphs=1) #Cond 1 #vector_Morphdist_(-1_in_first_val_gives_normal_approx) 4 # number of recruitment assignments (overrides GP*area*seas parameter values) 0 # recruitment interaction requested #GP seas area for each recruitment assignment 1 1 1 1 1 2 1 1 3 1 1 4 # 12 #_N_movement_definitions 3 # first age that moves (real age at begin of season, not integer) # seas,GP,source_area,dest_area,minage,maxage # ramp from age 5 to 12 coinciding with onset of maturity # 1 1 1 1 5 12 # 1 1 1 2 5 12 # 1 1 1 3 5 12 # 1 1 1 4 5 12 # 1 1 2 1 5 12 # 1 1 2 2 5 12 # 1 1 2 3 5 12 # 1 1 2 4 5 12 # 1 1 3 1 5 12 # 1 1 3 2 5 12 # 1 1 3 3 5 12 # 1 1 4 1 5 12 # 1 1 4 2 5 12 # 1 1 4 4 5 12 1 1 1 1 8 15 1 1 1 2 8 15 1 1 1 3 8 15 1 1 1 4 8 15 1 1 2 1 8 15 1 1 2 2 8 15 # 1 1 2 3 8 15 1 1 2 4 8 15 1 1 3 1 8 15 # 1 1 3 2 8 15 1 1 3 3 8 15 1 1 4 1 8 15 1 1 4 2 8 15 1 1 4 4 8 15 1 #_Nblock_Designs 2 #1975 2006 2006 2015 193 318 319 356 0.5 #_fracfemale 1 #_natM_type:_0=1Parm; 1=N_breakpoints;_2=Lorenzen;_3=agespecific;_4=agespec_withseasinterpolate 2 0 12 3 # GrowthModel: 1=vonBert with L1&L2; 2=Richards with L1&L2; 3=age-specific K; 4=not implemented 1 #_Growth_Age_for_L1 999 #_Growth_Age_for_L2 (999 to use as Linf) #2 # number of K multipliers to read # 2 6 # ages for K multiplier 4 1 8 9 10 0 #_SD_add_to_LAA (set to 0.1 for SS2 V1.x compatibility) 1 #_CV_Growth_Pattern: 0 CV=f(LAA); 1 CV=F(A); 2 SD=F(LAA); 3 SD=F(A) 1 #_maturity_option: 1=length logistic; 2=age logistic; 3=read age-maturity matrix by growth_pattern #_placeholder for empirical age-maturity by growth pattern #3 #_maturity_option: 1=length logistic; 2=age logistic; 3=read age-maturity matrix by growth_pattern; 4=read age-fecundity ## 50% mature at age 2 years - same as Kolody 2010 #0 0 0 0 0 0 0 0.25 0.5 0.75 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 #_placeholder for empirical age-maturity by growth pattern 1 #_First_Mature_Age 1 #_fecundity option:(1)eggs=Wt*(a+b*Wt);(2)eggs=a*L^b;(3)eggs=a*Wt^b 0 #Hermaphroditism option # -1 #Hermaphroditism season # 0 #Include males in spawning biomass 1 #_parameter_offset_approach (1=none, 2= M, G, CV_G as offset from female-GP1, 3=like SS2 V1.x) 1 #_env/block/dev_adjust_method (1=standard; 2=with logistic trans to keep within base parm bounds) #_growth_parms #_LO HI INIT PRIOR PR_type SD PHASE env-var use_dev dev_minyr dev_maxyr dev_stddev Block Block_Fxn 0.075 2 0.8 0.8 0 100 -5 0 0 0 0 0.5 0 0 # NatM_p_1_Fem_GP:1_ ## comparable to Kolody, 3mth period of "year"; need to keep eqivalent to annual values as M multiplied by season 3/12 #-3 3 0.4 0.4 0 100 -5 0 0 0 0 0.5 0 0 # NatM_p_2_Fem_GP:1_ ## Sensitivity with lower M for the older age classes -3 3 0.25 0.25 0 100 -5 0 0 0 0 0.5 0 0 # NatM_p_2_Fem_GP:1_ 1 45 30.374 30.374 0 10 -2 0 0 0 0 0.5 0 0 # L_at_Amin_Fem_GP_1_ ## growth pars from Paige see "BET_growth_for_MFCL.xls" 120 170 150.913 150.913 0 10 -4 0 0 0 0 0.5 0 0 # L_at_Amax_Fem_GP_1_ 0.05 0.5 0.332 0.332 0 0.8 -4 0 0 0 0 0 0 0 # VonBert_K_Fem_GP_1_ ## ## K deviates , one per age class 1 8 9 10 # this replicates Paige's growth function -5 5 0.452 0.452 -1 1 -1 0 0 0 0 0 0 0 -5 5 2 2 -1 1 -1 0 0 0 0 0 0 0 -5 5 1.25 1.25 -1 1 -1 0 0 0 0 0 0 0 -5 5 1.112 1.112 -1 1 -1 0 0 0 0 0 0 0 0.05 0.25 0.1 0.1 0 0.1 -3 0 0 0 0 0.5 0 0 # CV_young_Fem_GP_1_ ## base on Paige see "BET_growth_for_MFCL.xls" 0.05 0.25 0.1 0.1 0 0.1 -3 0 0 0 0 0.5 0 0 # CV_young_Fem_GP_1_ -3 3 2.217e-005 2.217e-005 0 100 -1 0 0 0 0 0.5 0 0 # Wtlen1_Fem from Chassot 2016 2 4 3.01211 3.01211 0 100 -1 0 0 0 0 0.5 0 0 # Wtlen2_Fem 1 150 110.888 110.888 0 100 -1 0 0 0 0 0.5 0 0 # Mat50_Fem -8 1 -0.25 -0.25 0 100 -1 0 0 0 0 0.5 0 0 # Mat_slope_Fem # -3 40 10 10 -1 0.8 -3 0 0 0 0 0 0 0 # Mat50-Fem # -3 3 -0.25 -0.25 0 0.8 -3 0 0 0 0 0 0 0 # Matslp-Fem -3 3 1 1 0 0.8 -3 0 0 0 0 0.5 0 0 # Eggs1_Fem -3 3 0 0 0 0.8 -3 0 0 0 0 0.5 0 0 # Eggs2_Fem -3 3 0 0 1 0.05 -4 0 0 0 0 0 0 0 # RecrDist_GP_1 -3 3 0 0 0 1 -3 0 0 0 0 0 0 0 # RecrDist_Area_1 -5 5 0 0 0 1 3 0 2 313 360 2 0 0 # RecrDist_Area_2 -5 5 0 0 0 1 3 0 2 313 360 2 0 0 # RecrDist_Area_3 ## no recruitment in south -5 5 0 0 0 1 3 0 2 313 360 2 0 0 # RecrDist_Area_4 0 0 0 0 -1 0 -4 0 0 0 0 0 0 0 # RecrDist_Seas_1_ 0 2 1 1 -1 0 -4 0 0 0 0 0 0 0 # CohortGrowDev ## ESTIMATION TURNED ON - sensitivie to assumed prior ## no movement for the young age class -10 12 10 0 0 4 -6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_1to_1 -10 12 0 0 0 4 -6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_1to_1 -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_1to_2 -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_1to_2 -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_1to_3 -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_1to_3 -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_1to_4 -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_1to_4 -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_2to_1 -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_2to_1 -10 12 10 0 0 4 -6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_2to_2 -10 12 0 0 0 4 -6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_2to_2 # -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_2to_3 # -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_2to_3 -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_2to_4 -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_2to_4 -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_3to_1 -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_3to_1 # -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_3to_2 # -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_3to_2 -10 12 10 0 0 4 -6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_3to_3 -10 12 0 0 0 4 -6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_3to_3 -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_4to_1 -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_4to_1 -10 12 -10 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_4to_2 -10 12 0 0 0 4 6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_4to_2 -10 12 10 0 0 4 -6 0 0 0 0 0.5 0 0 # MoveParm_A_seas_1_GP_1from_4to_4 -10 12 0 0 0 4 -6 0 0 0 0 0.5 0 0 # MoveParm_B_seas_1_GP_1from_4to_4 #Cond 0 #custom_MG-env_setup (0/1) #Cond -2 2 0 0 -1 99 -2 #_placeholder when no MG-environ parameters #0 #4 #-4 4 0 0 -1 99 7 #_placeholder when no MG-environ parameters #-4 4 0 0 -1 99 7 #_placeholder when no MG-environ parameters #-4 4 0 0 -1 99 7 #_placeholder when no MG-environ parameters #-4 4 0 0 -1 99 7 #_placeholder when no MG-environ parameters #Cond 0 #custom_MG-block_setup (0/1) #Cond -2 2 0 0 -1 99 -2 #_placeholder when no MG-block parameters #_seasonal_effects_on_biology_parms 0 0 0 0 0 0 0 0 0 0 #_femwtlen1,femwtlen2,mat1,mat2,fec1,fec2,Malewtlen1,malewtlen2,L1,K #Cond -2 2 0 0 -1 99 -2 #_placeholder when no seasonal MG parameters #Cond -4 #_MGparm_Dev_Phase 7 #_Spawner-Recruitment 3 #_SR_function #_LO HI INIT PRIOR PR_type SD PHASE -2 25 10 10 0 10 1 # SR_R0 0.2 1 0.8 0.8 2 0.2 -1 # SR_steep 0 2 0.6 0.6 0 0.8 -4 # SR_sigmaR -5 5 0 0 0 1 -3 # SR_envlink -5 5 0 0 0 1 -4 # SR_R1_offset 0 0 0 0 -1 0 -99 # SR_autocorr 0 #_SR_env_link 0 #_SR_env_target_0=none;1=devs;_2=R0;_3=steepness 1 #do_recdev: 0=none; 1=devvector; 2=simple deviations #193 232 364 ## limited data for last 4 deviates 3 #_recdev phase 1 # (0/1) to read 13 advanced options 0 #_recdev_early_start (0=none; neg value makes relative to recdev_start) -4 #_recdev_early_phase 0 #_forecast_recruitment phase (incl. late recr) (0 value resets to maxphase+1) 3 #_lambda for Fcast_recr_like occurring before endyr+1 232 #_last_early_yr_nobias_adj_in_MPD 232 #_first_yr_fullbias_adj_in_MPD 364 #_last_yr_fullbias_adj_in_MPD 364 1 #_max_bias_adj_in_MPD (-1 to override ramp and set biasadj=1.0 for all estimated recdevs) # max_bias_adj_in_MPD = 0.9 used based on analysis of SE of estimated recruitment as per Apeendix A of the SS manual 0 #_period of cycles in recruitment (N parms read below) -5 #min rec_dev 5 #max rec_dev 0 #_read_recdevs ##_end of advanced SR options #Fishing Mortality info 0.1 # F ballpark for tuning early phases - results insensitive to value 300 # F ballpark year 3 # F_Method: 1=Pope; 2=instan. F; 3=hybrid (hybrid is recommended) 2.9 # max F or harvest rate, depends on F_Method - results insensitive to value (alternative 1.2) 4 # N iterations for tuning F in hybrid method (recommend 3 to 7) # no additional F input needed for Fmethod 1 # read overall start F value; overall phase; N detailed inputs to read for Fmethod 2 # read N iterations for tuning for Fmethod 3 (recommend 3 to 7) #Fleet Year Seas F_value se phase (for detailed setup of F_Method=2) #_initial_F_parms #_LO HI INIT PRIOR PR_type SD PHASE 0 1 0 0 0 99 -1 # InitF_1_FISHERY1_ 0 1 0.1 0.1 0 99 2 # InitF_1_FISHERY2_ 0 1 0.1 0.1 0 99 2 # InitF_1_FISHERY3_ 0 1 0.1 0.1 0 99 2 # InitF_1_FISHERY4_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY5_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY6_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY7_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY8_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY9_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY10_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY11_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY12_ 0 1 0.1 0.1 0 99 2 # InitF_1_FISHERY13_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY14_ 0 1 0 0 0 99 -1 # InitF_1_FISHERY15_ # no additional F input needed for Fmethod 1 and 3 # F_method 2 requires: #Cond 0.05 1 0 #overall start F value; overall phase; N detailed inputs to read #Fleet Year Seas F_value se phase #_Q_setup # A=do power, B=env-var, C=extra SD, D=devtype(<0=mirror, 0/1=none, 2=cons, 3=rand, 4=randwalk); E=0=num/1=bio, F=err_type #_A B C D E F 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ## LL CPUE 1 region 0 0 0 -16 ## equivalent q 0 0 0 -16 0 0 0 0 0 0 0 0 0 0 0 0 #0 0 0 -16 ## equivalent q #0 0 0 -16 ## equivalent q #0 0 0 -16 ## equivalent q #0 0 0 -16 ## equivalent q 0 0 0 -16 ## equivalent q # 0 0 0 0 # 0 0 0 0 # 0 0 0 0 # 0 0 0 0 # 0 0 0 0 #_size_selex_types #_Pattern Discard Male Special 0 0 0 0 # 1 0 0 0 0 # 2 0 0 0 0 # 3 0 0 0 0 # 4 0 0 0 0 # 5 0 0 0 0 # 1 0 0 0 0 # 2 0 0 0 0 # 3 0 0 0 0 # 4 0 0 0 0 # 5 0 0 0 0 # 1 0 0 0 0 # 2 0 0 0 0 # 3 0 0 0 0 # 4 0 0 0 0 # 5 0 0 0 0 # 1 0 0 0 0 # 2 0 0 0 0 # 3 0 0 0 0 # 1 0 0 0 0 # 2 0 0 0 0 # 3 0 0 0 0 # 3 #_age_selex_types #_Pattern Discard Male Special 12 0 0 0 # logistic for Fleet 1 - FL2 12 0 0 0 # logistic for Fleet 2 - LL1S 15 0 0 2 # logistic for Fleet 3 - LL2, Equivalent for LL1S fishery 15 0 0 2 # logistic for Fleet 4 - LL3, Equivalent for LL1S fishery 27 0 0 5 # cubic spline for Fleet 5 - PSFS1S 15 0 0 5 # cubic spline for Fleet 6 - PSFS2, equivalent PSFS1S 15 0 0 5 # cubic spline for Fleet 7 - OT1N, equivalent PSFS1S 15 0 0 5 # cubic spline for Fleet 8 - OT2, equivalent PSFS1S 20 0 0 0 # double normal for Fleet 9 - PSLS1S 15 0 0 9 # double normal for Fleet 10 - PSLS2, equivalent PS LS 1 20 0 0 0 # double normal for Fleet 11 - BB1N 15 0 0 2 # logistic for Fleet 12 - LINE2, equivalent to LL1S 15 0 0 2 # logistic for Fleet 13 - LL1N, Equivalent for LL1S fishery 15 0 0 5 # cubic spline for Fleet 14 - PSFS1N, equivalent PSFS1S 20 0 0 0 # double normal for Fleet 15 - PSLS1N 15 0 0 2 # CPUE equivalent to LL fishery CPUE LL1 15 0 0 2 # CPUE equivalent to LL fishery CPUE LL2 15 0 0 2 # CPUE equivalent to LL fishery CPUE LL3 - season 1 15 0 0 2 # CPUE equivalent to LL fishery CPUE LL3 - season 2 15 0 0 2 # CPUE equivalent to LL fishery CPUE LL3 - season 3 15 0 0 2 # CPUE equivalent to LL fishery CPUE LL3 - season 4 15 0 0 2 # CPUE equivalent to LL fishery CPUE LL4 #_LO HI INIT PRIOR PR_type SD PHASE env-var use_dev dev_minyr dev_maxyr dev_stddev Block Block_Fxn ## logistic FL2 10 30 20 20 0 1000 3 0 0 0 0 0 0 0 # AgeSel_3_P_1_ 7 0 10 1 1 0 1000 2 0 0 0 0 0 0 0 # AgeSel_3_P_2_ 8 ## logistic LL1S,2,3,LL1N, LINE2 10 30 20 20 0 1000 3 0 0 0 0 0 0 0 # AgeSel_3_P_1_ 7 3 20 7 7 0 1000 2 0 0 0 0 0 0 0 # AgeSel_3_P_2_ 8 ## double normal LL1S,2,3,LL1N # 1 40 18 18 0 1000 3 0 0 0 0 0 0 0 # AgeSel_3_P_1_ 1 # -20 -3 -5 -5 0 1000 -5 0 0 0 0 0 0 0 # AgeSel_3_P_2_ 2 # -10 9 3 3 0 1000 4 0 0 0 0 0 0 0 # AgeSel_3_P_3_ 3 # -5 9 5 5 0 1000 4 0 0 0 0 0 0 0 # AgeSel_3_P_4_ 4 # -12 9 -6 -6 0 1000 5 0 0 0 0 0 0 0 # AgeSel_3_P_5_ 5 # -9 9 -1 -1 0 1000 5 0 0 0 0 0 0 0 # AgeSel_3_P_6_ 6 # cubic spline PSFS1S, PSFS2, PSFS1N, OT1N, OT2 0 2 0 0 -1 0 -99 0 0 0 0 0 0 0 # AgeSel_3_P_1_ 1 -0.001 4 1 1 1 0.01 3 0 0 0 0 0 0 0 # AgeSel_3_P_1_ 1 -1 0.001 -0.01 0 1 0.01 3 0 0 0 0 0 0 0 # AgeSel_3_P_1_ 1 1 7 2 2 0 0.5 -4 0 0 0 0 0 0 0 2 10 3 3 0 0.5 -4 0 0 0 0 0 0 0 5 14 6 6 0 0.5 -4 0 0 0 0 0 0 0 10 24 12 12 0 0.5 -4 0 0 0 0 0 0 0 12 24 20 20 0 0.5 -4 0 0 0 0 0 0 0 -10 10 -2.78 -2.78 0 2 2 0 0 0 0 0 0 0 -10 10 -4.9 -4.9 0 2 2 0 0 0 0 0 0 0 -10 10 0 0 0 2 -2 0 0 0 0 0 0 0 -10 10 -0.77 -0.77 0 2 2 0 0 0 0 0 0 0 -10 10 0 0 0 2 2 0 0 0 0 0 0 0 # double normal PSLS1S, PSLS2, PSLS1N ## exclude time blocks pre and post 2008 # 1 20 6 6 0 1000 3 0 0 0 0 0 1 2 # AgeSel_3_P_1_ 1 1 20 6 6 0 1000 3 0 0 0 0 0 0 0 # AgeSel_3_P_1_ 1 -20 -1 -5 -5 0 1000 -5 0 0 0 0 0 0 0 # AgeSel_3_P_2_ 2 # -10 9 2 2 0 1000 4 0 0 0 0 0 1 2 # AgeSel_3_P_3_ 3 -10 9 2 2 0 1000 4 0 0 0 0 0 0 0 # AgeSel_3_P_3_ 3 -5 9 2 2 0 1000 4 0 0 0 0 0 0 0 # AgeSel_3_P_4_ 4 -10 9 -6 -6 0 1000 -5 0 0 0 0 0 0 0 # AgeSel_3_P_5_ 5 -9 9 -5 -5 0 1000 5 0 0 0 0 0 0 0 # AgeSel_3_P_6_ 6 # double normal BB1N 0.2 20 6 6 0 1000 3 0 0 0 0 0 0 0 # AgeSel_3_P_1_ 1 -20 -1 -5 -5 0 1000 -5 0 0 0 0 0 0 0 # AgeSel_3_P_2_ 2 -10 9 2 2 0 1000 4 0 0 0 0 0 0 0 # AgeSel_3_P_3_ 3 -6 9 2 2 0 1000 4 0 0 0 0 0 0 0 # AgeSel_3_P_4_ 4 -20 9 -6 -6 0 1000 -5 0 0 0 0 0 0 0 # AgeSel_3_P_5_ 5 -9 9 -5 -5 0 1000 5 0 0 0 0 0 0 0 # AgeSel_3_P_6_ 6 # double normal PSLS1N ## exclude time blocks pre and post 2008 # 1 20 6 6 0 1000 3 0 0 0 0 0 1 2 # AgeSel_3_P_1_ 1 1 20 6 6 0 1000 3 0 0 0 0 0 0 0 # AgeSel_3_P_1_ 1 -20 -1 -5 -5 0 1000 -5 0 0 0 0 0 0 0 # AgeSel_3_P_2_ 2 # -10 9 2 2 0 1000 4 0 0 0 0 0 1 2 # AgeSel_3_P_3_ 3 -10 9 2 2 0 1000 4 0 0 0 0 0 0 0 # AgeSel_3_P_3_ 3 -5 9 2 2 0 1000 4 0 0 0 0 0 0 0 # AgeSel_3_P_4_ 4 -10 9 -6 -6 0 1000 -5 0 0 0 0 0 0 0 # AgeSel_3_P_5_ 5 -9 9 -5 -5 0 1000 5 0 0 0 0 0 0 0 # AgeSel_3_P_6_ 6 #Cond 0 #_custom_sel-env_setup (0/1) #Cond -2 2 0 0 -1 99 -2 #_placeholder when no enviro fxns #1 #_custom_sel-blk_setup (0/1) # 1 20 6 6 0 1000 3 ## AgeSel_9P_1_PSLS1_BLK1repl_193 # 1 20 6 6 0 1000 3 ## AgeSel_9P_1_PSLS1_BLK1repl_321 # -20 9 2 2 0 1000 4 ## AgeSel_9P_3_PSLS1_BLK1repl_193 # -20 9 2 2 0 1000 4 ## AgeSel_9P_3_PSLS1_BLK1repl_321 # -2 2 0 0 -1 99 -2 #_placeholder when no block usage # -2 2 0 0 -1 99 -2 #_placeholder when no selex devs #5 # placeholder for selparm_Dev_Phase #1 #_env/block/dev_adjust_method (1=standard; 2=logistic trans to keep in base parm bounds) # Tag loss and Tag reporting parameters go next 0 # TG_custom: 0=no read; 1=read if tags exist #Cond -6 6 1 1 2 0.01 -4 0 0 0 0 0 0 0 #_placeholder if no parameters 1 #_Variance_adjustments_to_input_values #_1 2 3 - one column per fishery/survey 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.05 0 0 0 0 0 0.05 #_add_to_survey_CV 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 #_add_to_discard_stddev 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 #_add_to_bodywt_CV 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 1 0.1 1 0.1 0.1 0.1 1 1 1 1 1 1 1 1 #_mult_by_lencomp_N 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 #_mult_by_agecomp_N 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 #_mult_by_size-at-age_N 1 #_maxlambdaphase 1 #_sd_offset #0 #3 # number of changes to make to default Lambdas (default value is 1.0) # Like_comp codes: 1=surv; 2=disc; 3=mnwt; 4=length; 5=age; 6=WtFreq; 7=sizeage; 8=catch; # 9=init_equ_catch; 10=recrdev; 11=parm_prior; 12=parm_dev; 13=CrashPen; 14=Morphcomp; 15=Tag-comp; 16=Tag-negbin #like_comp fleet/survey phase value wtfreq_method # 1 2 2 1 1 # 4 2 2 1 1 # 4 2 3 1 1 0 #3 # number of changes to make to default Lambdas (default value is 1.0) # Like_comp codes: 1=surv; 2=disc; 3=mnwt; 4=length; 5=age; 6=WtFreq; 7=sizeage; 8=catch; # 9=init_equ_catch; 10=recrdev; 11=parm_prior; 12=parm_dev; 13=CrashPen; 14=Morphcomp; 15=Tag-comp; 16=Tag-negbin #like_comp fleet/survey phase value wtfreq_method # 1 2 2 1 1 # 4 2 2 1 1 # 4 2 3 1 1 ## multinomial for tags 0.1 0 #1 # (0/1) read specs for more stddev reporting # 1 1 -1 5 1 5 1 -1 5 # selex type, len/age, year, N selex bins, Growth pattern, N growth ages, area For N-at-age, Year, N bins # -5 16 27 38 46 # vector with selex std bin picks (-1 in first bin to self-generate) # -1 2 14 26 40 # vector with growth std bin picks (-1 in first bin to self-generate) # -1 2 14 26 40 # vector with N-at-age std bin picks (-1 in first bin to self-generate) 999