#V3.30.16.02;_2020_09_21;_safe;_Stock_Synthesis_by_Richard_Methot_(NOAA)_using_ADMB_12.2 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States. #Foreign copyrights may apply. See copyright.txt for more information. #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov #_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis #C Data file for American Eel 2021 #C Maryland, PRFC, Virginia #_observed data: #MODEL DIMENSIONS 1998 #_StartYear 2019 #_EndYear 1 #_Nseasons 12 #_Months/Season 2 #_Nsubseasons 1 #_SpawningMonth 1 #_Ngenders 20 #_Nages 1 #_Nareas 1 #_Nfleetsandsurveys #!!END MODEL DIMENSIONS!! #FLEET DEFINITIONS #_fleet_type: 1=catch fleet; 2=bycatch only fleet; 3=survey; 4=ignore #_survey_timing: -1=for use of catch-at-age to override the month value associated with a datum #_fleet_area: area the fleet/survey operates in #_units of catch: 1=bio; 2=num (ignored for surveys; their units read later) #_catch_mult: 0=no; 1=yes #_rows are fleets #FleetType Timing Area CatchUnits CatchMult FleetName Comment 1 -1 1 1 0 Commercial # 1 #!!END FLEET DEFINITIONS!! #OPTIONAL BYCATCH FLEETS #Bycatch_fleet_input_goes_next #a: fleet index #b: 1=include dead bycatch in total dead catch for F0.1 and MSY optimizations and forecast ABC; 2=omit from total catch for these purposes (but still include the mortality) #c: 1=Fmult scales with other fleets; 2=bycatch F constant at input value; 3=bycatch F from range of years #d: F or first year of range #e: last year of range #f: not used # a b c d e f #!!END OPTIONAL BYCATCH FLEETS!! #CATCH #_Catch data: yr, seas, fleet, catch, catch_se #_catch_se: standard error of log(catch) #_NOTE: catch data is ignored for survey fleets #Year Season Fleet Catch Catch SE -999 1 1 501.6 0.02 1998 1 1 288.1 0.01 1999 1 1 296.2 0.01 2000 1 1 264.7 0.01 2001 1 1 264.1 0.01 2002 1 1 187.4 0.01 2003 1 1 268.3 0.01 2004 1 1 233.0 0.01 2005 1 1 256.0 0.01 2006 1 1 250.2 0.01 2007 1 1 231.4 0.01 2008 1 1 244.1 0.01 2009 1 1 232.6 0.01 2010 1 1 299.5 0.01 2011 1 1 384.7 0.01 2012 1 1 364.1 0.01 2013 1 1 327.1 0.01 2014 1 1 353.6 0.01 2015 1 1 277.6 0.01 2016 1 1 335.1 0.01 2017 1 1 305.2 0.01 2018 1 1 273.6 0.01 2019 1 1 178.5 0.01 -9999 0 0 0 0 #_terminator for catch observations #!!END CATCH!! #INDICES #_CPUE_and_surveyabundance_observations #_Units: 0=numbers; 1=biomass; 2=F; >=30 for special types #_Errtype: -1=normal; 0=lognormal; >0=T #_SD_Report: 0=no sdreport; 1=enable sdreport #Fleet/Survey Units ErrorDist SD_Report 1 1 0 0 #Commercial #Year Month Fleet/Survey Observation SE Comment -9999 1 1 1 1 #_terminator for survey observations #!!END INDICES!! #DISCARD 0 #_N_fleets_with_discard #_discard_units (1=same_as_catchunits(bio/num); 2=fraction; 3=numbers) #_discard_errtype: >0 for DF of T-dist(read CV below); 0 for normal with CV; -1 for normal with se; -2 for lognormal; -3 for trunc normal with CV # note, only have units and errtype for fleets with discard #_Fleet units errtype #Year Month Fleet Observation StandardError #-9999 0 0 0.0 0.0 # terminator for discard data #!!END DISCARD!! #MEAN BODY WEIGHT OR LENGTH 0 #_use meanbodysize_data (0/1) #30 #_COND_0 #_DF_for_meanbodysize_T-distribution_like # note: use positive partition value for mean body wt, negative partition for mean body length #Year Month Fleet Partition Observation CV #-9999 0 0 0 0 0 #_terminator for mean body size data #!!END MEAN BODY WEIGHT OR LENGTH!! #POPULATION LENGTH BINS # set up population length bin structure (note - irrelevant if not using size data and using empirical wtatage 1 # length bin method: 1=use databins; 2=generate from binwidth,min,max below; 3=read vector #2 # COND_binwidth for population size comp #10 # COND_minimum size in the population (lower edge of first bin and size at age 0.00) #94 # COND_maximum size in the population (lower edge of last bin) #22 # COND3_NumberPopLengthBinstoRead #10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100 105 110 115 1 # use length composition data (0/1) #_mintailcomp: upper and lower distribution for females and males separately are accumulated until exceeding this level. #_addtocomp: after accumulation of tails; this value added to all bins #_males and females treated as combined gender below this bin number #_compressbins: accumulate upper tail by this number of bins; acts simultaneous with mintailcomp; set=0 for no forced accumulation #_Comp_Error: 0=multinomial, 1=dirichlet #_Comp_Error2: parm number for dirichlet #_minsamplesize: minimum sample size; set to 1 to match 3.24, minimum value is 0.001 #MinTailComp AddedConstant CombineMF CompressBins CompErrDist DirichletParSelect MinSampleSize -10 0.0001 0 0 0 0 1 #Commercial #!!END POPULATION LENGTH BINS!! #LENGTH COMPOSITION DATA # sex codes: 0=combined; 1=use female only; 2=use male only; 3=use both as joint sexxlength distribution # partition codes: (0=combined; 1=discard; 2=retained) 27 #_N_LengthBins; then enter lower edge of each length bin 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100 105 110 115 120 125 130 135 140 #Year Month Fleet Sex Partition Nsamp 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100 105 110 115 120 125 130 135 140 #Year Month Fleet Sex Partition Nsamp 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100 105 110 115 120 125 130 135 140 1998 6 1 0 0 9 0 0 3836.901096 31654.43404 46727.97406 26310.17894 21651.08476 14799.47566 4933.158552 2466.579276 1644.386184 548.128728 685.16091 274.064364 0 0 0 0 0 0 0 0 0 0 0 0 0 1999 6 1 0 0 13 0 0 277.677296 22769.53827 75389.38586 28461.92284 20270.44261 12773.15562 8191.480232 4859.35268 3609.804848 2776.77296 1388.38648 416.515944 0 0 0 0 138.838648 0 0 0 0 0 0 0 0 2000 6 1 0 0 11 0 0 3652.934848 100278.9534 142346.6225 41714.15923 13551.20992 8248.56256 4242.117888 5420.483968 2945.9152 2592.405376 1178.36608 117.836608 0 0 0 0 0 0 0 0 0 0 0 0 0 2001 6 1 0 0 3 0 0 615.57406 15758.69594 17605.41812 10218.5294 11695.90714 11449.67752 8864.266464 6894.429472 4309.01842 2216.066616 369.344436 246.229624 0 0 0 0 0 0 0 0 0 0 0 0 0 2002 6 1 0 0 5 0 0 663.118302 10325.69927 15156.98976 10894.08639 11273.01113 10799.3552 8052.15081 6631.18302 3694.516254 1989.354906 1515.698976 568.387116 189.462372 0 0 0 0 0 0 0 0 0 0 0 0 2003 6 1 0 0 3 0 0 1100.897336 23905.1993 42148.64086 22804.30196 15412.5627 15884.37585 12896.22594 7077.19716 2516.336768 1100.897336 1100.897336 314.542096 314.542096 0 0 0 0 0 0 0 0 0 0 0 0 2004 6 1 0 0 3 0 124.006468 12648.65974 83704.3659 61383.20166 24677.28713 9672.504504 5704.297528 3472.181104 2356.122892 1240.06468 496.025872 248.012936 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2005 6 1 0 0 2 0 0 3610.134906 37071.9938 41396.24709 10169.23362 5405.98684 4839.986856 4028.016482 2345.934224 1068.496718 343.822372 37.029602 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2006 6 1 0 0 2 0 0 2636.585024 40537.49474 50095.11546 18620.88173 11205.48635 8074.541636 5932.316304 3790.090972 2636.585024 494.359692 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2007 6 1 0 0 4 0 0 4829.366434 26639.40839 46268.44616 19005.89371 16980.67553 11216.59301 8100.872728 6543.012588 2959.934266 1402.074126 155.786014 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2008 6 1 0 0 3 0 0 4855.895016 88620.08404 97811.59961 21678.10275 7457.267346 3815.346084 2081.097864 1213.973754 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2009 6 1 0 0 4 0 0 1371.15945 46924.1234 94457.651 26966.13585 20415.0407 10816.92455 4722.88255 1523.5105 914.1063 609.4042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2010 6 1 0 0 4 0 0 1905.957376 33592.49875 81479.67782 50984.35981 27159.89261 18821.32909 7623.829504 5241.382784 1905.957376 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2011 6 1 0 0 5 0 0 0 20455.06352 60391.13993 37987.97512 25650.00029 22125.34405 15306.98954 12200.74243 7839.26794 3246.83548 2272.784836 324.683548 324.683548 0 0 0 0 0 0 0 0 0 0 0 0 2012 6 1 0 0 5 0 0 1955.066556 29269.86079 113118.28 71660.66298 30295.14715 15876.74411 8899.987638 6401.293764 772.305756 0 268.047048 268.047048 0 0 0 0 0 0 0 0 0 0 0 0 0 2013 6 1 0 0 6 43.736544 0 43.736544 5012.81376 18083.11056 12388.41059 24814.63757 20903.17696 11094.21277 8854.699776 3898.036736 1063.100928 1111.312096 310.630432 266.893888 0 0 0 0 0 0 0 0 0 0 0 0 2014 6 1 0 0 4 0 0 5066.10882 103617.9672 186303.8954 64874.83076 25638.90953 10178.33314 7119.835932 1804.934658 1169.988872 325.637402 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2015 6 1 0 0 5 0 0 302.578742 17821.80995 99423.82534 50765.8823 32951.92609 22354.89553 9096.506986 3369.992968 460.053182 447.683044 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2016 6 1 0 0 7 43.736544 0 4282.847136 106474.8267 152628.0844 50762.46186 31297.8856 19200.44088 9983.748744 5893.52382 1492.092792 1057.2525 43.736544 43.736544 0 0 0 0 0 0 0 0 0 0 0 0 0 2017 6 1 0 0 5 0 0 0 6433.337992 34422.50609 27636.52269 32686.94854 20727.96292 14689.17363 6049.623548 2010.079552 781.396652 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2018 6 1 0 0 3 0 0 0 6069.923704 56496.98217 49026.30684 31983.82875 20310.89855 12606.76462 4902.630684 1634.210228 1167.29302 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2019 6 1 0 0 3 0 0 0 6930.940152 27573.088 25614.34404 19587.43956 13711.20769 11149.77329 7834.975824 3013.45224 602.690448 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -9999 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 #!!END LENGTH COMPOSITION DATA!! #AGE COMPOSITION OPTION OR CONDITIONAL AGE-AT-LENGTH OPTION 0 #_N_age_bins #0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 #1 #_N_ageerror_definitions #Age0 Age1 Age2 Age3 Age4 Age5 Age6 Age7 Age8 Age9 Age10 #-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 #MeanAge #0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 #SD #_mintailcomp: upper and lower distribution for females and males separately are accumulated until exceeding this level. #_addtocomp: after accumulation of tails; this value added to all bins #_males and females treated as combined gender below this bin number #_compressbins: accumulate upper tail by this number of bins; acts simultaneous with mintailcomp; set=0 for no forced accumulation #_Comp_Error: 0=multinomial, 1=dirichlet #_Comp_Error2: parm number for dirichlet #_minsamplesize: minimum sample size; set to 1 to match 3.24, minimum value is 0.001 #MinTailComp AddedConstant CombineMF CompressBins ErrorDist DirichletParSelect MinSampleSize #-10 0.0001 0 0 0 0 1 #ARcomm #3 #_Lbin_method_for_Age_Data: 1=poplenbins; 2=datalenbins; 3=lengths # sex codes: 0=combined; 1=use female only; 2=use male only; 3=use both as joint sexxlength distribution # partition codes: (0=combined; 1=discard; 2=retained) #Year Month Fleet Sex Partition AgeErr LbinLo LbinHi Nsamp 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 #-9999 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 #!!END AGE COMPOSITION OPTION OR CONDITIONAL AGE-AT-LENGTH OPTION!! #MEAN LENGTH OR BODY WEIGHT-AT-AGE 0 #_Use_MeanSize-at-Age_obs (0/1) # sex codes: 0=combined; 1=use female only; 2=use male only; 3=use both as joint sexxlength distribution # partition codes: (0=combined; 1=discard; 2=retained # ageerr codes: positive means mean length-at-age; negative means mean bodywt_at_age #_yr month fleet sex part ageerr ignore datavector(female-male) # samplesize(female-male) #!!END MEAN LENGTH OR BODY WEIGHT-AT-AGE!! #ENVIRONMENTAL DATA 0 #_N_environ_variables #Yr Variable Value # -9999 0 0 # terminator for environmental data #!!END ENVIRONMENTAL DATA!! #GENERALIZED SIZE COMPOSITION DATA 0 # N sizefreq methods to read # #!!END GENERALIZED SIZE COMPOSITION DATA!! #TAG-RECAPTURE DTA 0 # do tags (0/1) # #!!END TAG-RECAPTURE DATA!! #STOCK COMPOSITION DATA 0 # morphcomp data(0/1) # Nobs, Nmorphs, mincomp # yr, seas, type, partition, Nsamp, datavector_by_Nmorphs # #!!END STOCK COMPOSITION DATA!! #SELECTIVITY EMPIRICAL DATA 0 # Do dataread for selectivity priors(0/1) # Yr, Seas, Fleet, Age/Size, Bin, selex_prior, prior_sd # feature not yet implemented #!!END SELECTIVITY EMPIRICAL DATA!! 999 ENDDATA